Change Log

Changes In Version 0.2 (Jul 11, 2023)

  • works with latest version of scipy (v.1.11.1)

  • works with latest version of networkx (v.3.1)

  • support different mean for the aggregation of scores across the different layers of each multiplex network

    • ‘gmean’: geometric mean, use by default and the only defined for multiXrank < v.0.2

    • ‘mean’: arithmetic mean

    • ‘hmean’: harmonic mean

    • ‘sum’: sum of nodes score through each layer

    • ‘nomean’: output scores of every layers without mean

  • support personalised pagerank and pagerank methods

Changes In Version 0.1 (May 16, 2022)

  • BUG Fixed test lambda parameter

  • BUG directed networks fixed

Changes In Version 0.0.8 (Jul 9, 2021)

  • BUG Fixed default parameters and lambda parameter for one-multiplex-only system

  • TST Added tests

Changes In Version 0.0.7 (Jul 8, 2021)

  • BUG fixed get_normalization_bipartite_alpha_beta

  • TST Added biological and hetionet tests

Changes In Version 0.0.6 (Jun 26, 2021)

  • ENH Print error and exit if multiplex or bipartite emp

Changes In Version 0.0.5 (Jun 26, 2021)

  • BUG fixed BipartiteAll matrix

Changes In Version 0.0.4 (Jun 24, 2021)

  • BUG Fixed self_loops parameter

Changes In Version 0.0.3 (Jun 22, 2021)

  • BUG Fixed weighted networks bug

  • ENH Added Boolean self_loops parameter to keep or not self-loops

  • RFR TSV output gives one file per multiplex

  • RFR Boolean codes with first digit=directed, second digit=weighted: 00, 01, 10, 11.

  • BUG Fixed transition matrix

Changes In Version 0.0.2 (Mai 7, 2021)

  • DOC Large documentation changes

  • ENH File and parameter inputs defined in YAML config file

  • RFR Large refactoring of the code into different classes

  • TST More tests

Changes In Version 0.0.1 (April 1, 2021)

  • Original code of Anthony Baptista reformatted for a python package